Table of contents This repository contains the data that support the findings of the manuscript "TOA: a software package for automated functional annotation in non-model plant species". Directories: benchmark-transcriptomes: Fasta files with the sequences corresponding to the benchmark transcriptomes tested in the manuscript: Cnuc: Cocos nucifera embryos (Huang et al., 2014). Fsyl: Fagus sylvatica leaves (Müller, Seifert, Lübbe, Leuschner, & Finkeldey, 2017). Pcan: Pinus canariensis immature xylem (Chano, Collada, & Soto, 2017). TOA: output of the six simulation tests performed with TOA. EnTAP: output of the six simulation tests performed with EnTAP. Trinotate: output of the three simulation tests performed with Trinotate. References: Chano, V., Collada, C., & Soto, A. (2017). Transcriptomic analysis of wound xylem formation in Pinus canariensis. BMC Plant Biology, 17(234). doi:10.1186/s12870-017-1183-3 Huang, Y. Y., Lee, C. P., Fu, J. L., Chang, B. C. H., Matzke, A. J. M., & Matzke, M. (2014). De novo transcriptome sequence assembly from coconut leaves and seeds with a focus on factors involved in RNA-directed DNA methylation. G3: Genes, Genomes, Genetics, 4(11), 2147–2157. doi:10.1534/g3.114.013409 Müller, M., Seifert, S., Lübbe, T., Leuschner, C., & Finkeldey, R. (2017). De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech. PLoS ONE, 12(9), 1–20. doi:10.1371/journal.pone.0184167

This work was supported by the following projects: SUBERINTRO (AGL2015-67495-C2-2-R), funded by the Spanish Ministry of Economy and Competitiveness; EDGECLOUD (RTI2018-096465-B-I00), funded by the Spanish Ministry of Science, Innovation and Universities; and EDGEDATA (P2018/TCS4499) funded by the Autonomous Community of Madrid.