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Vibrio 16S rRNA gene sequences

descriptionPublicationkeyboard_double_arrow_right Data Paper , Other literature type 01 Jan 2024 English Publisher:Zenodo

Authors: Delgado, Luis Fernando; Labrenz, Matthias; Andersson, Anders F.;

doi: 10.5281/zenodo.10993142 , 10.5281/zenodo.10875108 , 10.5281/zenodo.10875107

Vibrio 16S rRNA gene sequences

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Abstract

This database includes 16S rRNA gene sequences of complete Vibrio genomes from RefSeq (51 species, 317 strains - including 22 V. vulnificus strains), 41 draft V. vulnificus genomes from clinical isolates from the Baltic Sea region, and 84 draft V. vulnificus genomes from environmental Baltic Sea isolates. Fasta headers contain accession number and strain name for RefSeq complete genomes (e.g, >16S_rRNA::NZ_CP046839.1_Vibrio_cholerae_strain_2011EL-1271_chromosome_1:1902691-1904230(+)). Source and isolate name are given for the clinical (e.g, >16S_rRNA::Baltic_Sea.1_Vibrio_vulnificus_strain_FI_VV_18_01_contig00074:40-1579(-)) and for the (BaltVib) environmental Baltic Sea isolates (e.g,>16S_rRNA::Baltic_Sea.1_Vibrio_vulnificus_strain_BaltVib6-S-1_contig00004:5-455(-)) A number of non-16S sequences were included in the previous version by mistake. This has now been solved.

Related Organizations

Leibniz Association
Germany
GEOMAR Helmholtz Centre for Ocean Research Kiel
Germany
Leibniz Institute for Baltic Sea Research
Germany
Royal Institute of Technology
Sweden
Vilnius University
Lithuania

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Keywords

Baltic Sea, 16S rRNA, Vibrio vulnificus, Vibrio

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