AbstractInnovative flume experiments were conducted in a recirculating straight flume. Zostera noltei meadows were sampled in their natural bed sediments in the field at contrasting stages of their seasonal growth. The aims of this study were: (i) to quantify the combined effects of leaf flexibility and development characteristics of Zostera noltei canopies on their interaction with hydrodynamics; and (ii) to quantify the role of Zostera noltei meadows in suspended sediment trapping and bed sediment resuspension related with changes in hydrodynamic forcing caused by the seasonal development of seagrasses. Velocity within the canopy was significantly damped. The attenuation in velocity ranged from 34 to 87% compared with bare sediments and was associated with a density threshold resulting from the flow‐induced canopy reconfiguration. The reduction in flow was higher in dense canopies at higher velocities than in less dense canopies, in which the reduction in flow was greater at low velocities. These contrasted results can be explained by competition between a rough‐wall boundary layer caused by the bed and a shear layer caused by the canopy. The velocity attenuation was associated with a two to three‐fold increase in bottom shear stress compared with unvegetated sediment. Despite the increase in near‐bed turbulence, protection of the sediment against erosion increased under a fully developed meadow, while sediment properties were found to be the main factor controlling erosion in a less developed meadow. Deposition fluxes were higher on the vegetated bed than on bare sediments, and these fluxes increased with leaf density. Fewer freshly deposited sediments were resuspended in vegetated beds, resulting in an increase in net sediment deposition with meadow growth. However, in the case of a very high leaf area index, sediment was mostly deposited on leaves, which facilitated subsequent resuspension and resulted in less efficient sediment trapping than in the less developed meadow.