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Nucleotide degradation and ribose salvage in yeast

Authors: Xu, Yi-Fan; Letisse, Fabien; Absalan, Farnaz; Lu, Wenyun; Kuznetsova, E.; Brown, Greg; Caudy, Amy; +3 Authors

Nucleotide degradation and ribose salvage in yeast

Abstract

Nucleotide degradation is a universal metabolic capability. Here we combine metabolomics, genetics and biochemistry to characterize the yeast pathway. Nutrient starvation, via PKA, AMPK/SNF1, and TOR, triggers autophagic breakdown of ribosomes into nucleotides. A protein not previously associated with nucleotide degradation, Phm8, converts nucleotide monophosphates into nucleosides. Downstream steps, which involve the purine nucleoside phosphorylase, Pnp1, and pyrimidine nucleoside hydrolase, Urh1, funnel ribose into the nonoxidative pentose phosphate pathway. During carbon starvation, the ribose‐derived carbon accumulates as sedoheptulose‐7‐phosphate, whose consumption by transaldolase is impaired due to depletion of transaldolase's other substrate, glyceraldehyde‐3‐phosphate. Oxidative stress increases glyceraldehyde‐3‐phosphate, resulting in rapid consumption of sedoheptulose‐7‐phosphate to make NADPH for antioxidant defense. Ablation of Phm8 or double deletion of Pnp1 and Urh1 prevent effective nucleotide salvage, resulting in metabolite depletion and impaired survival of starving yeast. Thus, ribose salvage provides means of surviving nutrient starvation and oxidative stress.

Country
France
Keywords

570, autophagy, Medicine (General), Saccharomyces cerevisiae Proteins, QH301-705.5, [SDV]Life Sciences [q-bio], Ribose, cellular metabolism Keywords: autophagy, Saccharomyces cerevisiae, AMP-Activated Protein Kinases, Protein Serine-Threonine Kinases, Glyceraldehyde 3-Phosphate, Article, Pentose Phosphate Pathway, R5-920, nutrient starvation, Stress, Physiological, Gene Expression Regulation, Fungal, Subject Categories: RNA, Biology (General), N-Glycosyl Hydrolases, mass spectrometry, Nucleotides, Cyclic AMP-Dependent Protein Kinases, Transaldolase, [SDV] Life Sciences [q-bio], Purine-Nucleoside Phosphorylase, Sugar Phosphates, metabolism, NADP, Signal Transduction

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
62
Top 10%
Top 10%
Top 10%
Green
gold