This archive contains input and ouput files used and generated for the scanning of intrinsically disordered region and the prediction of their binding sites to receptor proteins. The archive contains 3 directories and a README file detailing their contents : the initial raw sequence and alignment data for every chain -> DIRECTORY fasta_msa/ the input and output data of every Alphafold run for every complex -> DIRECTORY af2_runs/ the native reference structures -> DIRECTORY ref_capri_curated/ The protein-peptide complex cases have been assigned a distinct index number, from 1 to 42, consistent across the several directories of the archive. Their corresponding directories are labelled as <index>_<pdbcode>. These data can be used to rerun specific sections of the pipeline and scripts provided in: https://github.com/i2bc/SCAN_IDR