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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Dataset . 2023
Data sources: Datacite
ZENODO
Dataset . 2023
Data sources: ZENODO
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Size harmonizing planktonic Foraminifera number concentrations in the water column

Authors: Chaabane, Sonia; de Garidel-Thoron, Thibault; Giraud, Xavier; Meilland, Julie; Brummer, Geert-Jan A.; Jonkers, Lukas; Mortyn, P. Graham; +8 Authors

Size harmonizing planktonic Foraminifera number concentrations in the water column

Abstract

Data and R code for " Size harmonizing planktonic Foraminifera number concentrations in the water column " by Sonia Chaabane, Thibault de Garidel-Thoron, Xavier Giraud, Julie Meilland, Geert-Jan A. Brummer, Lukas Jonkers, P. Graham Mortyn, Mattia Greco, Nicolas Casajus, Olivier Sulpis, Michal Kucera, Azumi Kuroyanagi, Hélène Howa, Gregory Beaugrand, Ralf Schiebel The codes serve to generate the new normalization approach in order to not estimate number concentration of planktonic Foraminifera (ind/m3) in the finer and larger size fractions than the collection size fraction range. We use data from the FORCIS database that have been collected from the global ocean at different depths over the past century. We find a general cumulative distribution over the size fractions that can be described using a Michaelis Menten function. This yields multiplication factors by which one fraction can be normalized to any other size fraction equal to or larger than 100 µm. The resulting size normalization model was tested with data from various depths and compared to an earlier size normalization solution. Scripts written by Sonia Chaabane DATA SOURCES * FORCIS database https://doi.org/10.5281/zenodo.7390791 DATA 1. data_raw_from_excel.RDS CODES 1. Prepare_data.R: Read the data and prepare it for the analyses 2. Calculate_f&Shalf.R: Analyse the data and build the model 3. Model_validation.R: compare the actual vs. estimated number concentration 4. Berger_number_concentration_estimations.R: compare the actual vs. estimated number concentration using Berger 1969 correction scheme 5. Cross validation.R: Application of the FORCIS number concentration-size correction scheme on independent dataset 6. Modelfunctions.R

Keywords

Planktonic Foraminifera, size fraction, vertical distribution, FORCIS database

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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