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All figures and code were generated in RStudio 2022.02.3+492 "Prairie Trillium" Release. All packages needed to run the R code are shown in the RMD’s. Code to generate figures and statistical analysis: DVTindex_help.Rmd Code to generate figure 3 Figure5_PrairieVSCommonGarden Code to generate figure 5 PATHOFigs_for_Manu_FEB22.Rmd Code to generate figures 1, 2, 4 SUPP_Figure3_DimPathoEDIT.Rmd Code to generate supplementary figure 3 (fig S3) STATSAnalysis_PathoDim2B.Rmd Code to generate all tables and statistical analysis in the manuscript Description of data files: 2019and2020Prairie_data.txt This file contains data collected from the prairie sites in 2019 and 2020 Dim2b_latlon.csv The latitudinal and longitudinal coordinates for the common garden sites and prairie sites as well as precipitation data DVTINDEX_from_DVT.csv A separate file that contains the data that produced fig 3. This data file is sourced from SEPT2019_2020_COMPILED_2b_DATACOLL.txt SEPT2019_2020_COMPILED_2b_DATACOLL.txt SEPT2019_2020_COMPILED_2b_DATACOLL_plots.txt SEPT2019_2020_COMPILED_2b_DATACOLL_plots_longversion.txt These 3 data files are different versions of the same raw data that was collected from the common garden sites in 2019 and 2020. The code calls for all 3 at different points to generate plots and run statistical analyses Summary [ insert unique name here] Various data frames generated from r mark downs that contain summary statistics of the data. These are used to produce the figures in PATHOFigs_for_Manu_FEB22.Rmd graphs.
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