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El Protein Data Bank (PDB) y su impacto en la investigación científica

Authors: Rudiño-Piñera, Enrique; Quintero-Hernández, Verónica; Juárez-González, Victor Rivelino;

El Protein Data Bank (PDB) y su impacto en la investigación científica

Abstract

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RESUMEN El Protein Data Bank (banco de datos de proteínas), abreviado como PDB, es el banco de información estructural de proteínas a nivel atómico, donde están depositadas todas las estructuras tridimensionales de las macromoléculas biológicas determinadas por la comunidad científica mundial y que incluye a proteínas, ácidos nucleicos, carbohidratos y lípidos. Su uso es libre y hasta noviembre del 2021 tiene 184,202 estructuras depositadas. La mayor parte de la información tridimensional con la que cuenta el PDB con respecto a las biomoléculas es la referente a proteínas con 158,644 estructuras depositadas y la técnica más utilizada para la determinación de las estructuras es la difracción de rayos X con 161,144 estructuras depositadas. En este año, el PDB cumple 50 años y la información que nos proporciona ha revolucionado la visión que teníamos sobre los procesos biológicos a nivel atómico. El PDB es una enorme base de datos de estructuras y una fuente de información importante sobre diversas macromoléculas, las cuales pueden ser analizadas por una diversidad de profesionales como: cristalógrafos, químicos, biólogos, bioquímicos, microbiólogos, médicos, farmacéuticos, entre otros. El conocer la estructura de una macromolécula de interés puede ayudar a entender una gran cantidad de procesos químicos, biológicos y enfermedades, ya que entender a detalle atómico la alteración química y estructural de una macromolécula permite descifrar los mecanismos que participan en el proceso químico o biológico de estudio o en una enfermedad y el daño en el organismo; además se puede realizar el diseño de fármacos para su tratamiento. ABSTRACT The Protein Data Bank, abbreviated as PDB, is the structural information bank of proteins at the atomic level, where all the three-dimensional structures of biological macromolecules determined by the world scientific community are deposited and which includes proteins, nucleic acids, carbohydrates, and lipids. Its use is free, and until november 2021 it has 184,202 structures deposited. Most of the three-dimensional information that the PDB has with respect to biomolecules refers to proteins with 158,644 structures deposited and the most used technique for the determination of structures is X-ray diffraction with 161,144 structures deposited. In this year, the PDB celebrates 50 years, and the information it provides us has revolutionized the vision we had about biological processes at the atomic level. The Protein Data Bank is a very large database of structures and is also a source of much important information on various macromolecules, which can be analyzed by a variety of professionals such as: crystallographers, chemists, biologists, biochemists, microbiologists, doctors, pharmacists, among others. Knowing the structure of a macromolecule of interest can help to understand a large number of chemical and biological processes and diseases, since understanding in atomic detail the chemical and structural alteration of a macromolecule allow us to decipher mechanisms that participate in the chemical or biological process or the one that cause disease and damage in the organism; In addition, the design of drugs for its treatment can be carried out.

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Mexico
Keywords

PDB; Difracción de rayos X; RMN; Criomicroscopía electrónica, BIOLOGÍA Y QUÍMICA, PDB; X-ray diffraction; NMR; Electronic cryomicroscopy

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