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License: CC BY
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Deep Transcranial Adaptive Ultrasound Localization Microscopy of the Human Brain Vascularization: supplemental software and data

Authors: Demené, Charlie; Robin, Justine; Dizeux, Alexandre; Heiles, Baptiste; Pernot, Mathieu; Tanter, Mickael; Perren, Fabienne;

Deep Transcranial Adaptive Ultrasound Localization Microscopy of the Human Brain Vascularization: supplemental software and data

Abstract

We provide here sample data and basic sample codes (matlab) to illustrate the main concepts and techniques described in the manuscript entitled "Deep Transcranial Adaptive Ultrasound Localization Microscopy of the Human Brain Vascularization", to be published (at the date of the upload on the Zenodo repository) in the Nature Biomedical Engineering journal. It illustrates the most important steps of the processing routine, per se: Beamforming (image formation): we supply raw RF data and the matlab based beamforming routine. Aberration correction: we supply a demo code detailing the important steps of aberration correction. Output is an aberration correction profile that can be fed into the beamforming routine, and a image with aberration correction is produced. Filtering: we supply the beamformed data (similar to the output of the 2 previous bullet points), SVD filtering routine and display code for visualization of the microbubbles. We provide super-localisation data based on the previous data, along with display code for overlay with the raw data. We also provide code for visualisation of the bubble density image resulting from this process.

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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downloads
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72