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Influence of Paleolithic Range Contraction, Admixture and Long-Distance Dispersal on Genetic Gradients of Modern Humans in Asia

Authors: Catarina Branco; Nicolas Ray; Mathias Currat; Miguel Arenas;

Influence of Paleolithic Range Contraction, Admixture and Long-Distance Dispersal on Genetic Gradients of Modern Humans in Asia

Abstract

Each folder is identified according to the scenario, and contains another folder with the input files (files *.txt, *.par, *.sam, *.asc) to simulate it, the corresponding simulated genetic data (files *.arp) and the derived PC maps (files *.png). A file with the locations of the samples is also included (coord.txt). * Pure Paleolithic expansion * The folder “Paleo” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion, ignoring the range contraction induced by the LGM and LDD events. * Pure Paleolithic expansion considering the range contraction induced by the LGM * The folder “Paleo_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion suffering the range contraction induced by the LGM. * Pure Paleolithic expansion considering long-distance dispersal (LDD) events * The folder “Paleo_LDD” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion considering LDD events. * Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and East Asia considering the range contraction induced by the LGM * The folder “Paleo2NeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and later from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and East Asia considering LDD events * The folder “Paleo2NeoIR0_LDD” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by two Neolithic expansions from Middle East and later from East Asia considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from Middle East considering the range contraction induced by the LGM * The folder “Paleo_MiddleEastNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0) from Middle East suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering the range contraction induced by the LGM * The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES) and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from Middle East considering LDD events * The folder “Paleo_MiddleEastNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0) from Middle East considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering LDD events * The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES) the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from Middle East considering the range contraction induced by the LGM * The folder “Paleo_MiddleEastNeoIR004_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering the range contraction induced by the LGM * The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0.04) from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from Middle East considering LDD events * The folder “Paleo_MiddleEastNeoIR004_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering LDD events * The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0.04) from East Asia considering LDD events.

Related Organizations
Keywords

spatially-explicit simulations, last glacial maximum, long-distance dispersal, range contraction, human genetic gradients, range expansion

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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