Fortran programs for structured antedependence (SAD) models

This project provides fortran scripts allowing to run single- and multiple-trait structured antedependence models with ASReml3 for studying data with repeated measurements. It contains 3 fortran programs: saduni.f90 for single-trait SAD model; sadmulti.f90 for multiple-trait SAD model; matrixSAD.f90 to calculate variance-covariance matrix using SAD parameters and a tutorial (SAD_tutorial.docx) (To use saduni.f90 and sadmulti.f90 with ASReml4 see additional notes)

{"references": ["David et al., 2017, Multiple-trait structured antedependence model to study the relationship between litter size and birth weight in pigs and rabbits, Genet Sel Evol., 49:11 DOI: 10.1186/s12711-017-0288-3\t URL: http://www.gsejournal.org/content/49/1/11"]}

Format accepted in the .gdg file changed in ASReml4. To use sad fortran programs with ASReml4 you have to change "6D13.7" by "6D14.7" line 79 in sadmulti.f90 and line 73 in saduni.f90

Country

France

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Keywords

[INFO.INFO-PL]Computer Science [cs]/Programming Languages [cs.PL], 330, Fortran, [INFO] Computer Science [cs], [INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation, 004, [INFO.INFO-PL] Computer Science [cs]/Programming Languages [cs.PL], structured antedependence model, Fortran, ASReml, structured antedependence model, ASReml, [INFO]Computer Science [cs], [INFO.INFO-MO] Computer Science [cs]/Modeling and Simulation, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]

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