Supplementary materials for a study of rocks associated with Holocene human burials at Madjedbebe, Northern Territory, Australia Compendium DOI: http://dx.doi.org/10.5281/zenodo.10616 Author of this repository: Ben Marwick (benmarwick@gmail.com) Published in: Lowe, Kelsey M., Lynley A. Wallis, Colin Pardoe, Ben Marwick5, Chris Clarkson, Tiina Manne, Mike A. Smith and Richard Fullagar 2014. Ground-penetrating radar and burial practices in western Arnhem Land, Australia. Archaeology in Oceania https://doi.org/10.1002/arco.5039 Contents: One rmarkdown file (Rocks-and-burials-at-MJB.Rmd) that can be executed in R. This file contains the narrative found in the published paper and R code used to analyse the data and generate the figures. To execute this file, ensure all the files are together in a directory in the same structure as they are in this repository, then open R and run knitr::knit2html("Rocks-and-burials-at-MJB.Rmd"). There are many dependencies on non-core R packages and other software (see the dependencies list below), so you'll need to download and install all of those before attempting to run the rmarkdown file. Two r files containing code that the rmarkdown file uses to load libraries and load data. One html file (Rocks-and-burials-at-MJB.html). This is the output produced when the Rmd file is executed. It includes the text and figures. Five shapefiles containing the raw data. Licences: Text: CC-BY (http://creativecommons.org/licenses/by/4.0/) Code: MIT (http://opensource.org/licenses/MIT year: 2014, copyright holder: Ben Marwick) Data: CC0 (http://creativecommons.org/publicdomain/zero/1.0/) attribution requested in reuse Dependencies: I used RStudio (version 0.98.682) for convenience, but it's not strictly necessary, unlike the following items which are: Identified using sessionInfo(): R version 3.0.3 (2014-03-06) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] splines grid stats graphics grDevices utils datasets [8] methods base other attached packages: [1] dependencies_0.0-1 Momocs_0.2-6 pander_0.3.8 [4] coin_1.0-23 survival_2.37-7 BEST_0.2.1 [7] rjags_3-13 coda_0.16-1 lattice_0.20-27 [10] plyr_1.8.1 reshape2_1.4.0.99 ggplot2_1.0.0 [13] gridExtra_0.9.1 splancs_2.01-34 rgeos_0.3-4 [16] PBSmapping_2.67.60 mapdata_2.2-2 maps_2.3-6 [19] maptools_0.8-29 sp_1.0-14 loaded via a namespace (and not attached): [1] ade4_1.6-2 ape_3.1-1 boot_1.3-11 [4] colorspace_1.2-4 deldir_0.1-5 digest_0.6.4 [7] evaluate_0.5.3 foreign_0.8-61 formatR_0.10 [10] gtable_0.1.2 jpeg_0.1-8 jsonlite_0.9.7 [13] knitr_1.5 labeling_0.2 LearnBayes_2.12 [16] MASS_7.3-31 Matrix_1.1-3 modeltools_0.2-21 [19] munsell_0.4.2 mvtnorm_0.9-9999 nlme_3.1-117 [22] proto_0.3-10 Rcpp_0.11.1 rgl_0.93.996 [25] rmarkdown_0.1.4 scales_0.2.4 scatterplot3d_0.3-35 [28] shapes_1.1-9 spdep_0.5-71 stats4_3.0.3 [31] stringr_0.6.2 tools_3.0.3 yaml_2.1.11 Other system dependencies identified using dependencies::needs()(https://github.com/ropensci/dependencies): "Pandoc (>= 1.12.3, http://johnmacfarlane.net/pandoc) for exporting markdown files to other formats." "jags (>= 3.0.0)" "GEOS (>= 3.2.0); for building from source: GEOS from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by William Kyngesburye at http://www.kyngchaos.com/ may be used for source installs on OSX." "libjpeg" "OpenGL, GLU Library, zlib (optional), libpng (>=1.2.9, optional), FreeType(optional)"