The yearly variations of the quality of the upgraded biogas and the efficiency of digestate treatment were evaluated in an outdoors pilot scale high rate algal pond (HRAP) interconnected to an external absorption column (AC) via a conical settler. CO2 concentrations in the upgraded biogas ranged from 0.7% in August to 11.9% in December, while a complete H2S removal was achieved regardless of the operational month. CH4 concentrations ranged from 85.2% in December to 97.9% in June, with a limited O2 and N2 stripping in the upgraded biogas mediated by the low recycling liquid/biogas ratio in the AC. Biomass productivity ranged from 0.0 g m-2 d-1 in winter to 22.5 g m-2 d-1 in summer. Finally, microalgae diversity was severely reduced throughout the year likely due to the increasing salinity in the cultivation broth of the HRAP induced by process operation in the absence of effluent.