The presented integrated production-energy system for rural areas integrates biorefinery processes within agro-energy complexes for production of biological raw material for numerous bio-products and energy generation from local renewable sources assuming restitution of the natural environment resources, low emissions and minimizing other environment pollutions. The presented scenarios are encompassed within the frameworks of the future market bioeconomy in which the share of services and products resulting from use of innovative biotechnological processes and energy generation will be significant. Areas with large resources of agricultural, forest and water management raw materials as well as those focused on environment-supportive activities, including bioconversion to biofuels and bioenergy, are particularly predisposed for actions in the area of rational use of natural resources and bioeconomy in the circular system. Mutually linked, sustainable development of local energy generation and agriculture will be the determinant of bioeconomy development.