Agricultural science combines amongst others applied socioeconomic disciplines, applied plant animal physiology and environmental sciences (soil science, hydrology, erosion/geomorphology). Research workflows, like for other applied sciences, depend on the disciplines and methods that are applied, as well as on the way that the organisation that does the research is embedded in the agricultural sector. This chapter was written from the perspective of the Consultative Group on International Agricultural Research (CGIAR), a global partnership that unites organisations engaged in research for sustainable development with funders, including governments, foundations and international and regional organisations. CGIAR's mission implies working for international development, but many of the processes apply to national agricultural research organisations as well. As it impossible to give a general framework for research workflows in our field, we will present case studies from the CIAGR to illustrate the diversity.