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Journal of Applied Probability
Article . 2009 . Peer-reviewed
License: Cambridge Core User Agreement
Data sources: Crossref
Journal of Applied Probability
Article . 2009 . Peer-reviewed
Data sources: Crossref
https://dx.doi.org/10.48550/ar...
Article . 2009
License: arXiv Non-Exclusive Distribution
Data sources: Datacite
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A Stochastic Model for Phylogenetic Trees

Authors: Rinaldo B. Schinazi; Thomas M. Liggett;

A Stochastic Model for Phylogenetic Trees

Abstract

We propose the following simple stochastic model for phylogenetic trees. New types are born and die according to a birth and death chain. At each birth we associate a fitness to the new type sampled from a fixed distribution. At each death the type with the smallest fitness is killed. We show that if the birth (i.e. mutation) rate is subcritical, we obtain a phylogenetic tree consistent with an influenza tree (few types at any given time and one dominating type lasting a long time). When the birth rate is supercritical, we obtain a phylogenetic tree consistent with an HIV tree (many types at any given time, none lasting very long).

Keywords

FOS: Biological sciences, Probability (math.PR), Populations and Evolution (q-bio.PE), FOS: Mathematics, Quantitative Biology - Populations and Evolution, Mathematics - Probability

  • BIP!
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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    11
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
11
Average
Top 10%
Average
Green
bronze