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Plant Breeding
Article . 2023 . Peer-reviewed
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HAL Clermont Université
Article . 2023
License: CC BY
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HAL INRAE
Article . 2023
License: CC BY
Data sources: HAL INRAE
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Extending Finlay–Wilkinson regression with environmental covariates

Authors: Piepho, Hans‐peter; Blancon, Justin;

Extending Finlay–Wilkinson regression with environmental covariates

Abstract

Abstract Finlay–Wilkinson regression is a popular method for analysing genotype–environment interaction in series of plant breeding and variety trials. It involves a regression on the environmental mean, indexing the productivity of an environment, which is driven by a wide array of environmental factors. Increasingly, it is becoming feasible to characterize environments explicitly using observable environmental covariates. Hence, there is mounting interest to replace the environmental index with an explicit regression on such observable environmental covariates. This paper reviews the development of such methods. The focus is on parsimonious models that allow replacing the environmental index by regression on synthetic environmental covariates formed as linear combinations of a larger number of observable environmental covariates. Two new methods are proposed for obtaining such synthetic covariates, which may be integrated into genotype‐specific regression models, that is, criss‐cross regression and a factor‐analytic approach. The main advantage of such explicit modelling is that predictions can be made also for new environments where trials have not been conducted. A published dataset is employed to illustrate the proposed methods.

Countries
Germany, France
Keywords

[SDV] Life Sciences [q-bio], 330, [SDV]Life Sciences [q-bio], partial least squares, singular value decomposition, synthetic covariate, factor-analytic model, reduced rank regression, factorial regression

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
23
Top 10%
Top 10%
Top 10%
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hybrid
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