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New Phytologist
Article . 2021
New Phytologist
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Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Authors: Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; +30 Authors

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Abstract

Summary Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.

Countries
France, Slovenia, Belgium, United Kingdom, Netherlands, Germany, France, France, Germany
Keywords

Physiology, [SDV.SA.AGRO]Life Sciences [q-bio]/Agricultural sciences/Agronomy, info:eu-repo/classification/ddc/580, interoperability, Plant Science, MINIMUM INFORMATION, FAIR smernice, plant phenotyping, metadatos, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, interoperabilidad, [SDV.BV] Life Sciences [q-bio]/Vegetal Biology, information retrieval, Phenomics, info:eu-repo/classification/udc/60, [SDV.SA.AGRO] Life Sciences [q-bio]/Agricultural sciences/Agronomy, 580, rastlinska fenotipizacija, Research, metadata, phenotypes, biotehnologija, Biology and Life Sciences, normas, phenomics, findability, Plants, fenotipos, ONTOLOGIES, data, VOCABULARY, standards, reusability, fenomika, standardi, STANDARDS, REPOSITORY, metapodatki

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    121
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
121
Top 1%
Top 10%
Top 1%
Green
hybrid