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Journal of General Virology
Article . 2024 . Peer-reviewed
License: CC BY
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HAL INRAE
Article . 2024
License: CC BY
Data sources: HAL INRAE
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https://doi.org/10.1101/2024.0...
Article . 2024 . Peer-reviewed
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Novel phages of Pseudomonas syringae unveil numerous potential auxiliary metabolic genes

Authors: Feltin, Chloé; Garneau, Julian R.; Morris, Cindy E.; Bérard, Annette; Torres-Barceló, Clara;

Novel phages of Pseudomonas syringae unveil numerous potential auxiliary metabolic genes

Abstract

Relatively few phages that infect plant pathogens have been isolated and investigated. The Pseudomonas syringae species complex is present in various environments, including plants. It can cause major crop diseases, such as bacterial canker on apricot trees. This study presents a collection of 25 unique phage genomes that infect P. syringae . These phages were isolated from apricot orchards with bacterial canker symptoms after enrichment with 21 strains of P. syringae . This collection comprises mostly virulent phages, with only three being temperate. They belong to 14 genera, 11 of which are newly discovered, and 18 new species, revealing great genetic diversity within this collection. Novel DNA packaging systems have been identified bioinformatically in one of the new phage species, but experimental confirmation is required to define the precise mechanism. Additionally, many phage genomes contain numerous potential auxiliary metabolic genes with diversified putative functions. At least three phages encode genes involved in bacterial tellurite resistance, a toxic metalloid. This suggests that viruses could play a role in bacterial stress tolerance. This research emphasizes the significance of continuing the search for new phages in the agricultural ecosystem to unravel novel ecological diversity and new gene functions. This work contributes to the foundation for future fundamental and applied research on phages infecting phytopathogenic bacteria.

Country
France
Keywords

570, auxiliary metabolic genes (AMGs), [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], apricot orchards, Pseudomonas syringae/virology; Pseudomonas syringae/genetics; Genome, Viral; Plant Diseases/microbiology; Plant Diseases/virology; Pseudomonas Phages/genetics; Phylogeny; Genetic Variation; Bacteriophages; Pseudomonas syringae; apricot orchards; auxiliary metabolic genes (AMGs); bacterial canker, Pseudomonas syringae, Genetic Variation, bacterial canker, Genome, Viral, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy, [SDV.GEN.GPO] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Phage, Bacteriophages, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Pseudomonas Phages, [SDV.BV.PEP] Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy, Phylogeny, Plant Diseases

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
5
Top 10%
Average
Top 10%
Green
hybrid
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