Glassy carbon has properties making it attractive as a containment material for radioactive waste. In this study, the diffusivity of the radiological important fission product, strontium, is measured. Two hundred kiloelectronvolt strontium ions were implanted at room temperature. The implanted samples were either annealed isochronally for 1 h up to 900°C or by increasing the temperature linearly up to 648°C. The Sr profiles were determined by Rutherford backscattering spectrometry (RBS). The isochronally annealed samples showed Fickian diffusion at 300°C ( D = 6.7 × 10 −19 m 2 s −1 ) with segregation occurring at the higher temperatures. Raman spectroscopy indicated a link between damage annealing and the onset of segregation. During increasing temperature, the system is dynamic with diffusion taking place. An equation to determine diffusion coefficients for ramped heating was derived. Fickian diffusion occurred with an activation energy of 1.97 eV for 414–454°C, and from 458 to 558°C, it was 0.184 eV. At higher temperatures, a segregation of the strontium towards the surface was observed. A calculation of the heat of segregation of Sr in carbon supports this segregation. The results show that the in situ RBS measurements with a linear increase in temperature give additional information compared with the conventional isochronal annealing.