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Genome Biology and Evolution
Article . 2019 . Peer-reviewed
License: CC BY
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Genome Biology and Evolution
Article
License: CC BY NC
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PubMed Central
Article . 2019
License: CC BY
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The Mitochondrial Genome of Eleusine indica and Characterization of Gene Content Within Poaceae

Authors: Hall, Nathan D.; Zhang, Hui; Mower, Jeffrey P.; McElroy, Joseph Scott; Goertzen, Leslie R.;

The Mitochondrial Genome of Eleusine indica and Characterization of Gene Content Within Poaceae

Abstract

Abstract Plant mitochondrial (mt) genome assembly provides baseline data on size, structure and gene content, but resolving the sequence of these large and complex organelle genomes remains challenging due to fragmentation, frequent recombination, and transfers of DNA from neighboring plastids. The mitochondrial genome for Eleusine indica (Poaceae: goosegrass) is comprehensibly analyzed here, providing key reference data for an economically significant invasive species that is also the maternal parent of the allotetraploid crop Finger millet (Eleusine coracana). The assembled E. indica genome contains 33 protein coding genes, 6 rRNA subunits, 24 tRNA, 8 large repetitive regions 15 kb of transposable elements across a total of 520,691 bp. Evidence of RNA editing and loss of rpl2, rpl5, rps14, rps11, sdh4 and sdh3 genes is evaluated in the context of an updated survey of mt genomic gene content across the grasses through an analysis of available publicly available data. Hypothesized patterns of Poaceae mt gene loss are examined in a phylogenetic context to clarify timing, showing that rpl2 was transferred to the nucleus from the mitochondrion prior to the origin of the PACMAD clade.

Country
United States
Keywords

570, Plant Biology, 610, rpl2, Horticulture, Genes, Plant, Poaceae, Eleusine, Evolution, Molecular, Agronomy and Crop Sciences, Agricultural Science, Phylogeny, Plant Sciences, Botany, Life Sciences, Agriculture, Molecular Sequence Annotation, gene loss, mitochondrial genome, Genome, Mitochondrial, Other Plant Sciences, Genome, Plant, Research Article

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    popularity
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    Top 10%
    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
5
Top 10%
Average
Average
Green
gold