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Multi-stage splitting integrators for sampling with modified Hamiltonian Monte Carlo methods

Authors: Elena Akhmatskaya; Elena Akhmatskaya; Mario Fernández-Pendás; Jesús María Sanz-Serna; Tijana Radivojevic;

Multi-stage splitting integrators for sampling with modified Hamiltonian Monte Carlo methods

Abstract

Modified Hamiltonian Monte Carlo (MHMC) methods combine the ideas behind two popular sampling approaches: Hamiltonian Monte Carlo (HMC) and importance sampling. As in the HMC case, the bulk of the computational cost of MHMC algorithms lies in the numerical integration of a Hamiltonian system of differential equations. We suggest novel integrators designed to enhance accuracy and sampling performance of MHMC methods. The novel integrators belong to families of splitting algorithms and are therefore easily implemented. We identify optimal integrators within the families by minimizing the energy error or the average energy error. We derive and discuss in detail the modified Hamiltonians of the new integrators, as the evaluation of those Hamiltonians is key to the efficiency of the overall algorithms. Numerical experiments show that the use of the new integrators may improve very significantly the sampling performance of MHMC methods, in both statistical and molecular dynamics problems.

31 pages, 9 figures. arXiv admin note: text overlap with arXiv:1706.04032

Keywords

Enhanced sampling, FOS: Physical sciences, Numerical Analysis (math.NA), Computational Physics (physics.comp-ph), Modified Hamiltonian, Multi-stage integrators, FOS: Mathematics, Hamiltonian Monte Carlo, Mathematics - Numerical Analysis, Physics - Computational Physics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
10
Top 10%
Average
Top 10%
Green
hybrid