Although archaeobotanical sampling and recovery programmes are a relatively recent implementation in East African archaeology, results from sites where they have been carried out follow a similar trend. This is one of abundant recovery of wood charcoal, but very little in the way of other macroscopic plant remains. Restricted archaeological evidence and ethnographic interviews show the importance of grains, in particular finger millet (Eleusine coracana), for the Bunyoro people of Uganda in pre-colonial times. It has been suggested that one of the possible reasons why finger millet is not being recovered in quantity from archaeological contexts is because the processing of this crop does not involve heating and hence there is not the chance of being deposited in charred form in the archaeological record. Recent ethnographic work on finger millet processing in Uganda shows that it is exposed to heat and potential charring during cleaning and preparation of the grain for either storage or cooking, and this regime is discussed in terms of its activities and products. These findings reinforce the need for archaeobotanists and archaeologists working in this region to look for other possible causes of the scarcity of macroscopic plant remains, and also the importance of considering integrated evidence for agricultural activity on prehistoric sites.