AbstractThe ecological theory of the existence of multiple stable states between species, or the spatial heterogeneity of some unobserved environmental factor, supports the idea of multitype interactions between species. These multitype interactions can lead to different assemblages of species abundances. An exploratory tool for the detection of these species assemblages and for their spatial analysis is presented in this article. A two‐stage analysis is proposed. First, a classification into types of species assemblages using only the species abundances at each site, regardless of their spatial location, is performed. The clustering procedure is based on multivariate normal mixtures and provides a measure of the classification uncertainty. Second, some tools for the study of the spatial structure of these types of assemblages are presented. We transfer the classification uncertainty to the spatial analysis of the classes in order to draw more accurate conclusions. This classification and spatial analysis method is used to point out a spatial gradient of infection in a host–pathogen system in the Åland Islands in Finland. It can be a useful preliminary tool for ecological studies involving the spatial distributions of several species.