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The American Journal of Human Genetics
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The American Journal of Human Genetics
Article . 2017 . Peer-reviewed
License: Elsevier Non-Commercial
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A Pentanucleotide ATTTC Repeat Insertion in the Non-coding Region of DAB1, Mapping to SCA37, Causes Spinocerebellar Ataxia

Authors: Seixas, AI; Loureiro, JR; Costa, C; Ordóñez-Ugalde, A; Marcelino, H; Oliveira, CL; Loureiro, JL; +14 Authors

A Pentanucleotide ATTTC Repeat Insertion in the Non-coding Region of DAB1, Mapping to SCA37, Causes Spinocerebellar Ataxia

Abstract

Advances in human genetics in recent years have largely been driven by next-generation sequencing (NGS); however, the discovery of disease-related gene mutations has been biased toward the exome because the large and very repetitive regions that characterize the non-coding genome remain difficult to reach by that technology. For autosomal-dominant spinocerebellar ataxias (SCAs), 28 genes have been identified, but only five SCAs originate from non-coding mutations. Over half of SCA-affected families, however, remain without a genetic diagnosis. We used genome-wide linkage analysis, NGS, and repeat analysis to identify an (ATTTC)n insertion in a polymorphic ATTTT repeat in DAB1 in chromosomal region 1p32.2 as the cause of autosomal-dominant SCA; this region has been previously linked to SCA37. The non-pathogenic and pathogenic alleles have the configurations [(ATTTT)7-400] and [(ATTTT)60-79(ATTTC)31-75(ATTTT)58-90], respectively. (ATTTC)n insertions are present on a distinct haplotype and show an inverse correlation between size and age of onset. In the DAB1-oriented strand, (ATTTC)n is located in 5' UTR introns of cerebellar-specific transcripts arising mostly during human fetal brain development from the usage of alternative promoters, but it is maintained in the adult cerebellum. Overexpression of the transfected (ATTTC)58 insertion, but not (ATTTT)n, leads to abnormal nuclear RNA accumulation. Zebrafish embryos injected with RNA of the (AUUUC)58 insertion, but not (AUUUU)n, showed lethal developmental malformations. Together, these results establish an unstable repeat insertion in DAB1 as a cause of cerebellar degeneration; on the basis of the genetic and phenotypic evidence, we propose this mutation as the molecular basis for SCA37.

Keywords

Adaptor Proteins Signal Transducing/genetics, Male, genetics [DNA, Intergenic], DNA Mutational Analysis, Nerve Tissue Proteins/metabolism, genetics [Introns], Mutagenesis Insertional/genetics, genetics [Adaptor Proteins, Signal Transducing], Cerebellum, Chromosome Segregation, RNA Messenger/metabolism, Embryonic Development/genetics, Nerve Tissue Proteins/genetics, genetics [RNA], genetics [Spinocerebellar Ataxias], Age of Onset, genetics [Nerve Tissue Proteins], Chromosomes Human Pair 1/genetics, metabolism [Cerebellum], Middle Aged, Physical Chromosome Mapping, Pedigree, genetics [Microsatellite Repeats], Chromosomes, Human, Pair 1, DNA Intergenic/genetics, DNA, Intergenic, Female, Adaptor Proteins Signal Transducing/metabolism, Adult, Adolescent, genetics [Chromosome Segregation], Haplotypes/genetics, genetics [Mutagenesis, Insertional], Microsatellite Repeats/genetics, Embryonic Development, Nerve Tissue Proteins, RNA/genetics, RNA Messenger/genetics, metabolism [RNA, Messenger], Introns/genetics, metabolism [Adaptor Proteins, Signal Transducing], genetics [RNA, Messenger], Young Adult, genetics [Haplotypes], Chromosome Segregation/genetics, Humans, Genetic Predisposition to Disease, RNA, Messenger, Alleles, Cerebellum/metabolism, Adaptor Proteins, Signal Transducing, Spinocerebellar Ataxias/genetics, metabolism [Nerve Tissue Proteins], DAB1 protein, human, Base Sequence, genetics [Embryonic Development], Introns, Reelin Protein, HEK293 Cells, Haplotypes, genetics [Chromosomes, Human, Pair 1], RNA, Microsatellite Repeats, ddc: ddc:570

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
126
Top 1%
Top 10%
Top 1%
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