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IEEE Transactions on Parallel and Distributed Systems
Article . 2023 . Peer-reviewed
License: IEEE Copyright
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https://dx.doi.org/10.48550/ar...
Article . 2022
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FLUPS - A Flexible and Performant Massively Parallel Fourier Transform Library

Authors: Pierre Balty; Philippe Chatelain; Thomas Gillis;

FLUPS - A Flexible and Performant Massively Parallel Fourier Transform Library

Abstract

Massively parallel Fourier transforms are widely used in computational sciences, and specifically in computational fluid dynamics which involves unbounded Poisson problems. In practice the latter is usually the most time-consuming operation due to its inescapable all-to-all communication pattern. The original flups library tackles that issue with an implementation of the distributed Fourier transform tailor-made for successive resolutions of unbounded Poisson problems. However the proposed implementation lacks of flexibility as it only supports cell-centered data layout and features a plain communication strategy. This work extends the library along two directions. First, flups implementation is generalized to support a node-centered data layout. Second, three distinct approaches are provided to handle the communications: one all-to-all, and two non-blocking implementations relying on manual packing and MPI_Datatype to communicate over the network. The proposed software is validated against analytical solutions for unbounded, semi-unbounded, and periodic domains. The performance of the approaches is then compared against accFFT, another distributed FFT implementation, using a periodic case. Finally the performance metrics of each implementation are analyzed and detailed on various top-tier European facilities up to 49,152 cores. This work brings flups up to a fully production-ready and performant distributed FFT library, featuring all the possible types of FFTs and with flexibility in the data-layout. The code is available under a BSD-3 license at github.com/vortexlab-uclouvain/flups.

includes updated results due to a typo in [1], B.10

Country
Belgium
Related Organizations
Keywords

FOS: Computer and information sciences, FOS: Physical sciences, 68W10, 65T50, Distributed applications, Computational Fluid Dynamics, Computational Physics (physics.comp-ph), Fast Fourier Transforms, Computer Science - Distributed, Parallel, and Cluster Computing, Parallel Algorithms, Distributed, Parallel, and Cluster Computing (cs.DC), Physics - Computational Physics

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
Green