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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Digital Photographs, Image Processing Scripts, and Analysis Scripts for: Evolution of plumage patterns in pattern morphospace: a phylogenetic analysis of melanerpine woodpeckers

Authors: Carlson, Monica; Stoddard, Mary Caswell;

Digital Photographs, Image Processing Scripts, and Analysis Scripts for: Evolution of plumage patterns in pattern morphospace: a phylogenetic analysis of melanerpine woodpeckers

Abstract

Plumage patterns of melanerpine (Melanerpes-Sphyrapicus) woodpeckers are strikingly diverse. Understanding the evolution and function of this diversity is challenging due to the difficulty of quantifying plumage patterns. We use a 3-dimensional space to characterize the evolution of melanerpine achromatic plumage patterns. The axes of the space are three pattern features (spatial frequency, orientation, and contrast) quantified using 2-dimensional fast Fourier transformation of museum specimen images. Mapping plumage in pattern space reveals differences in how species and subclades occupy the space. To quantify these differences, we derive two new measures of pattern: "pattern diversity" (diversity across plumage patches within a species) and "pattern uniqueness" (divergence of patterns from those of other species). We estimate that the melanerpine ancestor had mottled plumage and find that pattern traits across patches and subclades evolve at different rates. Finally, we find that: (1) plumage contrast is positively correlated with habitat openness; (2) larger species have more unique plumage patterns and are less likely to display horizontal face patterning; and (3) species with visual displays tend to have horizontal patterns in dorsal patches and low spatial frequencies in lateral patches. We promote pattern spaces as powerful tools for investigating animal pattern evolution.

See the uploaded README file.Funding provided by: Princeton UniversityCrossref Funder Registry ID: http://dx.doi.org/10.13039/100006734Award Number: Funding provided by: David and Lucile Packard FoundationCrossref Funder Registry ID: http://dx.doi.org/10.13039/100000008Award Number:

The photographs were collected with a Nikon D7000 camera and have been converted from .nef file format to .ppm format for use in MATLAB.

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Keywords

plumage variation, animal pattern, Sphyrapicus, plumage evolution, plumage pattern, plumage signals, Plumage Complexity, Melanerpes, Fourier analysis

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
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