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Software . 2026
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
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gladstone-institutes/clustOpt: v1.3.0

Authors: Natalie Gill; Ayushi Agrawal; reubenthomas;

gladstone-institutes/clustOpt: v1.3.0

Abstract

New features clust_opt() gains a checkpoint_dir argument for checkpoint/resume of long runs. When set, each holdout subject's result is written to disk as it completes and reloaded on a rerun pointed at the same directory, so a run killed by an HPC wall-clock timeout resumes instead of restarting from zero. The sketched input and run seed are persisted too, so a resumed run is bit-identical to an uninterrupted one. All checkpoint I/O happens in the main process, never in future workers, so there is no parallel file-connection contention. Reusing a directory with a different configuration, input, or clustOpt version is an error, so checkpoints are never mixed across algorithm versions. Enabling checkpointing switches to deterministic per-subject seeding, so results differ from a non-checkpointed run but are stable across resumes. Default checkpoint_dir = NULL leaves existing behavior unchanged. clustOpt 1.2.4 Bug fixes ranger's "Growing trees.." and "Predicting.." progress lines are no longer printed regardless of verbose. They are now gated behind a new verbosity level 4, which covers output from packages other than Seurat (level 3 remains Seurat-only). Long runs at the default verbose = 0 are now silent.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average