DEprot: a comprehensive R-package for the analyses of label-free quantitation mass-spectrometry data
DEprot: a comprehensive R-package for the analyses of label-free quantitation mass-spectrometry data
The repository contains: inpute raw unmputed LFQ-intensities tables - and corresponding metadata info - for both RIME and whole cell proteomics; "source" (zipped) folder .Rmd and .html reports of the RIME and proteomics analyses are available, as well as imputation and differential analyses results of RIME, whole-cell PROTEOMICS, differential analyses and imputation benchmarking, analyses are zipped in folders labelled with the corresponding name renv environments for Linux, MacOS and Windows.
The DEprot R-package is publicly available as a GitHub repository at https://github.com/sebastian-gregoricchio/DEprot. Additional examples and functionalities for DEprot can be found at the publicly available tutorial and technical web-manual.
This repository includes all the codes used for the generation of figures presented in Eickhoff et al.
- Eindhoven University of Technology Netherlands
- Amsterdam University Medical Centers Netherlands
- Antoni van Leeuwenhoek Hospital Netherlands
- Oncode Institute Netherlands
Proteomics, RIME, differential analyses, Data Visualization, Immunoprecipitation, imputation, interactome, LFQ, Proteomics/methods, Mass Spectrometry, Mass Spectrometry/methods
Proteomics, RIME, differential analyses, Data Visualization, Immunoprecipitation, imputation, interactome, LFQ, Proteomics/methods, Mass Spectrometry, Mass Spectrometry/methods
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