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https://doi.org/10.5281/zenodo...
Dataset . 2023
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Claim

Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

Research datakeyboard_double_arrow_right Dataset 27 Mar 2023 English Publisher:ZenodoFunded by:EC | LEECHSYMBIO
Authors: Manzano-Marín, Alejandro; Kvist, Sebastian; Oceguera-Figueroa, Alejandro;

doi: 10.5281/zenodo.6539516 , 10.5281/zenodo.8021899 , 10.5281/zenodo.8305003 , 10.5281/zenodo.6539517

Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

Abstract

The data set consists of siz folders: 1) "genome_data": GenBank-formatted annotation files for newly sequenced Providencia siddallii endosymbionts. 2) "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline. 3) "phylongey": MrBayes run files for Providencia spp. Bayesian phylogenetic inference. 4) "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3. 5) "RepeatModeler_Prsiddallii": Log files for RepeatModeler runs of P. siddallii genomes. 6) "checkM2_Psiddallii": checkM2 input and output files for P. siddallii protein sets. 7) "breseq_runs": breseq output folders for variant calling on newly assembled genomes. 8) "GSAlign_Prsiddallii_GTOCOR": output files of variant calling using GSAlign between P. siddallii strain GTOCOR1 (sampled in 2015 and reported in Manzano-Marín et. al. 2015 GBE) and GTOCOR2 (sampled in 2019 and reported in the associated work).

Version 1.2.0 added the "breseq_runs" and "GSAlign_Prsiddallii_GTOCOR" folders, following reviewer's comments of the second version of the manuscript.

Related Organizations
Keywords

leech symbiont, B vitamin, alternative genetic code, blood feeder, Hirudinida, Providencia

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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