Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2023
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
versions View all 3 versions
addClaim

REvoSim v3: A fast evolutionary simulation tool with ecological processes

Authors: Furness, Euan N.; Garwood, Russell J.; Sutton, Mark D.;

REvoSim v3: A fast evolutionary simulation tool with ecological processes

Abstract

This is a patch release for the REvoSim software implementing changes from the review of v3.0.0 for The Journal of Open Source Software, and a few other minor improvements. The model, and initial release was been described in detail in the following paper: Garwood, R.J., Spencer A.R.T. and Sutton, M.D., 2019. REvoSim: Organism-level simulation of macro- and microevolution. Palaeontology 62(3),339-355. https://doi.org/10.1111/pala.12420 Additions in this release are described in the following paper: Furness, E.N., Garwood, R.J. and Sutton, M.D., 2023. REvoSim v3: A fast evolutionary simulation tool with ecological processes. JOSS. Accepted. The code is archived on zenodo.org: Other relevant references: Furness E.N., Garwood R.J., Mannion P.D. & Sutton M.D. 2021. Evolutionary simulations clarify and reconcile biodiversity-disturbance models. Proceedings of the Royal Society B 288(1949):20210240. https://doi.org/10.1098/rspb.2021.0240 Furness, E.N., Garwood, R.J., Mannion, P. D. & Sutton, M.D. 2021. Productivity, niche availability, species richness and extinction risk: Untangling relationships using individual-based simulations. Ecology and Evolution 11(13): 8923-8940. https://doi.org/10.1002/ece3.7730 Documentation: REvoSim Online Documentation EnviroGen Online Documentation Change log: The following has been changed since the last release. All additions are fully outlined in the documentation. REvoSim Updates to README files providing more details for building on both Windows and Linux Masks are now reset between runs on batch mode, and through button reset Pathogens are now reset between runs on batch mode, and through button reset Further details on time, species concepts, and exemplar usage have been added to the documentation More communication to the user has been added on save settings The log text has been added to the saved settings xml files New logging options for breed success, generation time, and species range have been added The above, and several other options have been added to the command line Splash image has been removed when running from commnad line Release information: Windows A zip containing all required binaries can be downloaded from the assets below. Alternatively an installer is provided. See notes below: Note 1: The .zip archive contains all REvoSim programs (REvoSim and EnviroGen). The .zip can be extracted and the programs run by double clicking the .exe files. All the required libraries have been included. Note 2: The windows installer will not overwrite any pre-existing REvoSim installations. Mac A zip containing the REvoSim programs (REvoSim and EnviroGen) as DMGs can be downloaded from the assets below. The software can be run by double clicking on either. To install the software, drag and drop the required DMGs into the Applications folder. In both these cases you may be required to the approve the software in security and privacy settings before it will launch. Note 1: Builds are x86-64, and so the software will not run at optimal speed on the new apple silicon Macs (tests suggest the speed is acceptable, however). Linux Any Linux users requiring a Linux build should contact palaeoware@gmail.com.

Related Organizations
Keywords

modelling, palaeontology, evolution, simulation

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 46
    download downloads 1
  • 46
    views
    1
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
46
1