These table contain information about ChIP-seq files from different sources used in Carolin Mattausch's master's thesis "Integration of transcriptome and epigenome for comparative analysis of various chondrocyte subtypes" conducted November 2022 to June 2023 in the Department of Developmental Biology at the Center of Medical Biotechnology, University Duisburg-Essen, under the supervision of Prof. Dr. Andrea Vortkamp, Dr. Manuela Wuelling, and Christoph Neu. Supplementary table 1: Table containing number of successfully mapped sequencing reads, peaks, and peak-associated genes for in-house murine and human ChIP-seq data. Supplementary table 2: File IDs of in-house murine ChIP-seq files used for identification of chromatin states with ChromHMM and integrative analysis of ChIP- and RNA-seq data. Supplementary table 3: File IDs of in-house human ChIP-seq files used for identification of chromatin states with ChromHMM. Supplementary table 4: Metadata, experiment, and file accession numbers for ChIP-seq files downloaded from ENCODE. These files were used in in comparison of H3K27me3 level between different murine and human tissues. Supplementary table 5: Metadata, experiment, and file accession numbers for ChIP-seq files downloaded from Roadmap. These files were used in in comparison of H3K27me3 level between different murine and human tissues. Supplementary table 6: Metadata, experiment, and file accession numbers for ChIP-seq files downloaded from Gene Expression Omnibus. These files were used in in comparison of H3K27me3 level between different murine and human tissues. Supplementary table 7: Metadata and file IDs of in-house murine ChIP-seq files used in comparison of H3K27me3 level between different murine and human tissues. Supplementary table 8: Metadata and file IDs of in-house human ChIP-seq files used in comparison of H3K27me3 level between different murine and human tissues.