This document describes a methodology for FAIR-by-design production of learning materials based on the backward instructional process that is extended with additional activities focusing on the implementation of the FAIR guiding principles. A general discussion on important aspect of implementation such as granularity, scope, metadata schema, interoperability and publication in relevant repositories is provided together with a step by step six stage workflow and checklists that help implement the FAIR-by-design process. The outlined methodology will be used as a blueprint for a train-the-trainer course aiming to present the practical FAIR-by-design instructional design.