What's Changed new features or functionality extend beast task and workflow to glob and output .ops, .rates, and *.root files by @tomkinsc in #478 Subsampler and augur workflow by @dpark01 in #483 bug fixes and small changes syntax bugfixes by @dpark01 in #462 tweaks to demux_only and demux_metag by @dpark01 in #464 omit --dirs from the MultiQC invocation to only show sample names in report by @tomkinsc in #467 hotfix for bug in output path by @dpark01 in #480 sc2 nextstrain: reduce temp file sizes by @dpark01 in #484 Fetch_SRA_to_BAM - tolerate no isolate defined by @dpark01 in #489 Update genbank.WDL so author_list input is optional by @tomkinsc in #473 documentation updates Enhancing documentation for viral-pipelines by @golu099 in #461 move transposed parameter_meta block outside command block scope to where it belongs by @tomkinsc in #477 Update LICENSE copyright year by @tomkinsc in #476 parameterization and default VM shapes de novo assembly & scaffold mem default 31 -> 63 GB by @tomkinsc in #465 parameterize disk size for illumina_demux task by @tomkinsc in #470 max_records_in_ram param 2000000 -> 10000000 for Nova S2 by @tomkinsc in #468 upstream docker tags / version dependencies bump pangolin by @dpark01 in #482 build updates and fixes delete the .travis directory by @tomkinsc in #448 dnanexus CI build fixes by @dpark01 in #485 #486 #487 #488 GitHub actions update by @tomkinsc in #474 Full Changelog: https://github.com/broadinstitute/viral-pipelines/compare/v2.1.33.16...v2.1.33.17