This repository contains genotype data from the article "A genomic snapshot of demographic and cultural dynamism in Upper Mesopotamia during the Neolithic Transition". Dataset preparation protocols are described in the article. Here, we only include the genotype files of 13 newly published Çayönü samples in eigenstrat format. The 1KGYoruba suffix refers to the dataset prepared using variable positions in the Yoruba population (see the paper for details). Others are well known Human Origins and 1240K panels. Code and processed data related to the paper has been deposited here. * The first version has missing individuals.