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FunTaxDB database for uBin software

Research datakeyboard_double_arrow_right Dataset 10 Oct 2022Publisher:Zenodo
Authors: Bornemann, Till LV; Esser, Sarah P; Stach, Tom L; Burg, Tim; Probst, Alexander J;

doi: 10.5281/zenodo.7180191 , 10.5281/zenodo.7180192

FunTaxDB database for uBin software

Abstract

This dataset consists of the FunTaxDB database used for the uBin software. The uBin software is designed to facilitate the curation of metagenome-asssembled genomes (MAGs). Please see a preprint on the uBin software on https://www.biorxiv.org/content/10.1101/2020.07.15.204776v2 . The FunTaxDB is based on the UniRef100 database with additional taxonomic strings in the FASTA headers. Those entries that did not have a taxonomic affiliation, were additionally BLASTed vs the ncbi-nr database. Entries that had a 100% similarity match to NCBI-nr recieved the NCBI-nr taxonomic affiliation of the matched record. Special characters in the taxonomic levels, separated by ';', were replaced by underscores to make working with regex less error-prone.

This study was funded by the Ministerium für Kultur und Wissenschaft des Landes Nordrhein- Westfalen ("Nachwuchsgruppe Dr. Alexander Probst").

Related Organizations
Keywords

database, protein annotation, taxonomic annotation, uBin, genome curation, metagenomics

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