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ZENODO
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License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2022
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Drugs, Diseases, Genes and Proteins in the CORD-19 Corpus

Authors: Badenes-Olmedo, Carlos; Alonso, Alvaro; Corcho, Oscar;

Drugs, Diseases, Genes and Proteins in the CORD-19 Corpus

Abstract

The BioNER+BioNEN system described in the paper "An Overview of Drugs, Diseases, Genes and Proteins in the CORD-19 Corpus", Badenes-Olmedo, Carlos et. al, (2022) was used to identify and normalize the drugs, diseases and genetic-related terms mentioned in the CORD-19 corpus (January 2022 Edition). Entity recognition and normalization was done for each paragraph of the scientific article. A first group of labels is created to identify the medical terms as they appear in the text (i.e. diseases_ss, chemicals_ss, genetics_ss), and in a standardized way (i.e. disease_terms_ss, chemical_terms_ss, genetic_terms_ss). In the case of diseases and genes/proteins, a predefined category is also established during the normalization process (i.e. disease_types_ss, genetic_types_ss ). The following group of labels contains the codes for each of the classification systems described in Section 3 (i.e. mesh_codes_ss, atc_codes_ss, cid_codes_ss, doid_codes_ss, cui_codes_ss, icd10_codes_ss, icd9_codes_ss, gard_codes_ss, snomed_codes_ss, nci_codes_ss, ncbi_codes_ss, uniprot_codes_ss). The suffix _ss in all tags indicates that the format is a textual list (i.e. string sequence).

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Keywords

cord19, genes, drugs, proteins, bio-ner, diseases

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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