Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2021
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2021
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2021
Data sources: Datacite
versions View all 2 versions
addClaim

OneZoom tree of life explorer

Authors: Wong, Yan; Rosindell, James;

OneZoom tree of life explorer

Abstract

You can use this docker image to run OneZoom for viewing on port 8080 (http://127.0.0.1:8080) using: `docker load --input oztree-complete.tpxz && docker run -p 8080:80 --name running_onezoom onezoom/oztree-complete` This may take a while (many minutes) to get going, because we are not allowed to package the IUCN data in this docker image (this would also risk packaging information which would become out of date). Therefore, when this image is run, it waits for the web server to be set up, then downloads the IUCN data from http://apiv3.iucnredlist.org/. This can take about 15 minutes and makes several large requests to the IUCN server (outputting console information as it does so). It can be tedious and unnecessary to have to re-download the IUCN data if you are regularly starting and stopping this image. To avoid this, once the IUCN processing has finished (when "IUCN DONE!" is output to the console), you can commit a new image using: `docker commit --change="CMD /sbin/my_init" running_onezoom onezoom/oztree-complete-with-iucn` then in future you can launch that image using `docker run -p 8080:80 onezoom/oztree-complete-with-iucn` which will run OneZoom on port 8080, without re-populating the IUCN data.

The One Zoom tree of life explorer provides an easy way to navigate the evolutionary tree that connects all living things. It is a product of the OneZoom not for profit organisation registered in the UK. Our mission is to advance the education of the public in the subjects of evolution, biodiversity and conservation of the variety of life on earth. The onezoom-complete.tpxz file is a compressed docker image containing everything necessary to run a stand-alone version of the One Zoom website (www.onezoom.org, see also our code repository at https://github.com/OneZoom/OZtree). Please note that the image contains both OneZoom software (use of which is subject to the open access One Zoom license https://www.onezoom.org/OZtree/static/downloads/OneZoom_License_V1.pdf) and third party data sources including images (please see https://www.onezoom.org/data_sources.html for more information).

{"references": ["Wong, Y. and Rosindell, J. (2021) Dynamic visualisation of million-tip trees: the OneZoom project. BioRxiv 2020.10.14.323055;"]}

Related Organizations
Keywords

tree of life, dataviz, fractal, evolution, conservation, bioinformatics, phylogeny, biodiversity

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    1
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 7
    download downloads 3
  • 7
    views
    3
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
1
Average
Average
Average
7
3