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broadinstitute/viral-pipelines: v2.1.10.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 04 Dec 2020Publisher:Zenodo
Authors: Daniel Park; Chris Tomkins-Tinch; Simon Ye; Irwin Jungreis; Ilya Shlyakhter; Hayden Metsky; Hanna; +8 Authors

doi: 10.5281/zenodo.4306358 , 10.5281/zenodo.4321810

broadinstitute/viral-pipelines: v2.1.10.0

Abstract

New or changed WDL workflows: new workflow: subsample_by_metadata_with_focal [#161] Changes: rename workflow augur_from_newick to augur_export_only, add new workflow augur_from_mltree [#151] drop support for trinity (pinned version) assembler [#168] bump upstream docker images [#169, #163] README changes [#162] Fixes: bugfix: isnvs_per_sample when specifying optional parameters [#160] bugfixes for use of set -o pipefail [#175, #173] bugfix: optional input handling in filter_bam_to_taxa [#171] VM shape parameterization or changes to defaults: mafft parameterization [#170] memory increase to task filter_sequences_to_list [#159] parameterize BEAST GPU settings [#158] memory increase to assemble_refbased (specifically to task align_reads) [#157] memory increase to task multi_align_mafft [#155] memory increase & cpu decrease to task refine_augur_tree and ancestral_tree (the timetree invocations) [#153] parameterize CPU count for task draft_augur_tree (iqtree) [#150] DNAnexus: update DNAnexus demux_launcher to v2 instance types [#156] update instance types to v2 [#167]

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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