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Reproducible Computational Environments with Binder

Authors: Sharan, Malvika; Gibson, Sarah;

Reproducible Computational Environments with Binder

Abstract

About the event: The East African Network for Bioinformatics training (EANBiT), seeks to upskill students in Bioinformatics using the model: coursework, 5-week residential training and finally research project placement at partner institutions. EANBiT works with universities in Kenya, Uganda and Tanzania, to offer MSc in Bioinformatics. It supports curriculum development, offers MSc fellowships to students, and support placement for research. The residential training (gone online this year), has four tracks: technical, Soft skills, Seminars, and Mini projects. The seminars involve talks from leaders in various areas of genomics, including open science. About the workshop: A short workshop was delivered as a hand-on guided training on building a Binder resource using the following agenda: - 15 minutes: presentation (attached slides) to introduce The Turing Way project, the importance of reproducibility in research and the Binder tool for creating executable codes and script through a browser - 30 minutes: hands-on development of a binder ready GitHub repository using Zero-to-Binder tutorial. - 15 minutes: Troubleshooting - 10 minutes: Wrap-up and final Q&A This training took place online and a shared HackMD was used for facilitating collaboration and discussion among the participants.

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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