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ZENODO
Doctoral thesis . 2020
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Thesis . 2020
License: CC BY
Data sources: Datacite
ZENODO
Thesis . 2020
License: CC BY
Data sources: Datacite
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Modelling of Gene Expression Data Using Evolving Spiking Neural Network - A Case Study on Nutrigenomics Problem

Authors: Shahi, Gautam Kishore;

Modelling of Gene Expression Data Using Evolving Spiking Neural Network - A Case Study on Nutrigenomics Problem

Abstract

The work presents a methodology to assess the problems behind static gene expression data modelling and analysis with machine learning techniques. As a case study, transcriptomic data collected during a longitudinal study on the effects of diet on the expression of oxidative phosphorylation genes was used. Data were collected from 60 abdominally overweight men and women after an observation period of eight weeks, whilst they were following three different diets. Real-valued static gene expression data were encoded into spike trains using Gaussian receptive fields for multinomial classification using an evolving spiking neural network (eSNN) model. Results demonstrated that the proposed methodology can be used for predictive modelling of static gene expression data and future works are proposed regarding the application of eSNNs for personalised modelling.

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Keywords

Transcriptome data analysis, Evolving spiking neural networks, Gaussian receptive fields, Static data, Gene expression, Microarray

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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