Views provided by UsageCounts
Summary This dataset contains raw result files for multiple-layer SOM (ml-SOM) repositioning analysis of infliximab and brodalumab. Infliximab_results.zip archive contains the results of ml-SOM repositioning analysis of infliximab (T1) as a potential therapeutics for ulcerative colitis (D1), Crohn’s disease (D2), COPD (R1) and sarcoidosis (R2). Data is organized in the archive as follows: inflixmab_UC_CD_COPD_SARC021018_results+.RData - R data file that contains ml-SOM environment folder "inflixmab_UC_CD_COPD_SARC021018_results+ - Results" - comprises of various PDF and CSV files representing the a ml-SOM analysis results. It also contains the separate layer-level SOM analysis results for all datasets: folder "1" - SOM analysis of infliximab dataset folder "2" - SOM analysis for ulcerative colitis and Crohn's disease dataset folder "3" - SOM analysis for COPD dataset folder "4" - SOM analysis for sarcoidosis dataset. Brodalumab_results.zip archive contains the results of ml-SOM repositioning analysis of brodalumab (T1) as a potential therapeutics for psoriasis (D1), Crohn’s disease (R1), and systemic juvenile idiopathic arthritis (R2). Data is organized in the archive as follows: brodalumab_CD_SJIA_301218_results+.RData - R data file that contains ml-SOM environment folder "brodalumab_CD_SJIA_301218_results+ - Results" - comprises of various PDF and CSV files representing the a ml-SOM analysis results. It also contains the separate layer-level SOM analysis results for all datasets: folder "1" - SOM analysis of brodalumab and psoriasis dataset folder "2" - SOM analysis for Crohn's disease dataset folder "3" - SOM analysis for systemic juvenile idiopathic arthritis dataset For detailed instructions on browsing the results and their interpretation please refer to the oposSOM package manual [1], as well as original publications [2-4]. References Henry Loeffler-Wirth, Hoang Thanh Le and Martin KalcheroposSOM.Comprehensive analysis of transcriptome data. DOI: 10.18129/B9.bioc.oposSOM Löffler-Wirth H, Kalcher M, Binder H. oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor.Bioinformatics. 2015 Oct 1;31(19):3225-7. DOI: 10.1093/bioinformatics/btv342. Epub 2015 Jun 10. Wirth H, von Bergen M, Binder H. Mining SOM expression portraits: feature selection and integrating concepts of molecular function. BioData Min. 2012 Oct 8;5(1):18. DOI: 10.1186/1756-0381-5-18. Wirth H, Löffler M, von Bergen M, Binder H. Expression cartography of human tissues using self organizing maps. BMC Bioinformatics. 2011 Jul 27;12:306. DOI: 10.1186/1471-2105-12-306.
drug repositioning, self-organizing maps, ulcerative colitis, Crohn's disease, COPD, sarcoidosis, psoriasis, systemic juvenile idiopathic arthritis
drug repositioning, self-organizing maps, ulcerative colitis, Crohn's disease, COPD, sarcoidosis, psoriasis, systemic juvenile idiopathic arthritis
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 1 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
| views | 2 |

Views provided by UsageCounts