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ZENODO
Dataset . 2019
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2019
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2019
License: CC BY
Data sources: Datacite
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Biologics repositioning: ml-SOM analysis raw results

Authors: Arakelyan, Arsen; Nersisyan, Lilit; Nikoghosyan, Maria; Siras Hakobyan; Simonyan, Arman; Hopp, Lydia; Loffler-Wirth, Henry; +1 Authors

Biologics repositioning: ml-SOM analysis raw results

Abstract

Summary This dataset contains raw result files for multiple-layer SOM (ml-SOM) repositioning analysis of infliximab and brodalumab. Infliximab_results.zip archive contains the results of ml-SOM repositioning analysis of infliximab (T1) as a potential therapeutics for ulcerative colitis (D1), Crohn’s disease (D2), COPD (R1) and sarcoidosis (R2). Data is organized in the archive as follows: inflixmab_UC_CD_COPD_SARC021018_results+.RData - R data file that contains ml-SOM environment folder "inflixmab_UC_CD_COPD_SARC021018_results+ - Results" - comprises of various PDF and CSV files representing the a ml-SOM analysis results. It also contains the separate layer-level SOM analysis results for all datasets: folder "1" - SOM analysis of infliximab dataset folder "2" - SOM analysis for ulcerative colitis and Crohn's disease dataset folder "3" - SOM analysis for COPD dataset folder "4" - SOM analysis for sarcoidosis dataset. Brodalumab_results.zip archive contains the results of ml-SOM repositioning analysis of brodalumab (T1) as a potential therapeutics for psoriasis (D1), Crohn’s disease (R1), and systemic juvenile idiopathic arthritis (R2). Data is organized in the archive as follows: brodalumab_CD_SJIA_301218_results+.RData - R data file that contains ml-SOM environment folder "brodalumab_CD_SJIA_301218_results+ - Results" - comprises of various PDF and CSV files representing the a ml-SOM analysis results. It also contains the separate layer-level SOM analysis results for all datasets: folder "1" - SOM analysis of brodalumab and psoriasis dataset folder "2" - SOM analysis for Crohn's disease dataset folder "3" - SOM analysis for systemic juvenile idiopathic arthritis dataset For detailed instructions on browsing the results and their interpretation please refer to the oposSOM package manual [1], as well as original publications [2-4]. References Henry Loeffler-Wirth, Hoang Thanh Le and Martin KalcheroposSOM.Comprehensive analysis of transcriptome data. DOI: 10.18129/B9.bioc.oposSOM Löffler-Wirth H, Kalcher M, Binder H. oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor.Bioinformatics. 2015 Oct 1;31(19):3225-7. DOI: 10.1093/bioinformatics/btv342. Epub 2015 Jun 10. Wirth H, von Bergen M, Binder H. Mining SOM expression portraits: feature selection and integrating concepts of molecular function. BioData Min. 2012 Oct 8;5(1):18. DOI: 10.1186/1756-0381-5-18. Wirth H, Löffler M, von Bergen M, Binder H. Expression cartography of human tissues using self organizing maps. BMC Bioinformatics. 2011 Jul 27;12:306. DOI: 10.1186/1471-2105-12-306.

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Keywords

drug repositioning, self-organizing maps, ulcerative colitis, Crohn's disease, COPD, sarcoidosis, psoriasis, systemic juvenile idiopathic arthritis

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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