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Supplementary data and scripts for Willemsen et al., 2019 "Genome plasticity in Papillomaviruses and de novo emergence of E5 oncogenes"

Authors: Anouk Willemsen; Marta Félez-Sánchez; Ignacio G. Bravo;

Supplementary data and scripts for Willemsen et al., 2019 "Genome plasticity in Papillomaviruses and de novo emergence of E5 oncogenes"

Abstract

Supplementary data for Willemsen et al., 2019 "Genome plasticity in Papillomaviruses and de novo emergence of E5 oncogenes". The data set consists of three folders: “Alignments”, “Bali-Phy” and “RandomPermutationTests”. The “Alignments” folder contains the different alignments used for phylogenetic tree construction and comparison. The “Bali-Phy” folder contains the final results and convergence diagnostics of the Common Ancestry tests obtained by using the Bali-Phy software. The “RandomPermutationTests” folder contains all the data and scripts to repeat the random permutation tests described in the manuscript. Please see the corresponding README files for more information.

Keywords

Common Ancestry Test, Random Permutation Test, Alignments, Common Ancestry Test, Random Permutation Test

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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