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geneontology/go-fastapi: v0.4.1

Authors: Sierra Moxon; kltm; abessiari; Charles Tapley Hoyt; Patrick Kalita; dustine32; Chris Mungall;

geneontology/go-fastapi: v0.4.1

Abstract

v0.4.1 Patch release on top of v0.4.0. Restores the ontology ribbon and the mygene→UniProtKB Alliance fallback — both broken by upstream data/API changes, not regressions in v0.4.0. No API surface change (same OpenAPI path-set; image tag 0.4.1). Fixed Ribbon 500 on goslim_agr (#165, #167). GOlr relabelled the molecular_function root GO:0003674 ("molecular_function" → "gene product or complex activity"), breaking get_ontology_subsets_by_id's annotation_class_label self-join → unguarded KeyError → 500 on every goslim_agr ribbon call (and /api/ontology/subset/{id}). Aspect roots are now resolved by stable GO ID (ASPECT_ROOTS), with guards so a future ontology label change can't take the widget down. No response-shape change. Alliance/mygene UniProtKB fallback (#159, #168). The Alliance of Genome Resources restructured GET /api/gene/{id} with no public API versioning: UniProtKB cross-references moved to gene.crossReferences[].referencedCurie and gene.gcrpCrossReference, away from the former top-level crossReferenceMap.other. gene_to_uniprot_from_alliance now reads the new gene_summary shape (e.g. HGNC:12139 / TRAV39 → UniProtKB:A0A0B4J263), plus deterministic mocked tests that lock the schema so a future silent change is caught in CI. Docs Devops centralization handoff notes for the operations-repo move (#164). — Release prepared by Claude Code agent on behalf of @kltm.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average