Abstract. We investigate the dynamics of the atmospheric Boundary Layer (BL) over the Atlantic Ocean, with a focus on the region surrounding Cabo Verde during the Joint Aeolus Tropical Atlantic Campaign (JATAC), using a combination of ground-based PollyXT and Doppler lidars, satellite lidar data from Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO), radiosondes, and the model outputs of the Integrated Forecasting System (IFS) of the European Centre for Medium-Range Weather Forecasts (ECMWF). The comparison of CALIPSO lidar results with ECMWF/IFS reanalysis for 2012–2022, revealed strong correlations for BL top over open ocean regions but weaker relation over dust-affected areas closer to the African continent. In these regions, space lidar indicated lower BL tops during daytime than those estimated by ECMWF/IFS. Observations in Cabo Verde highlight distinctive Marine Atmospheric Boundary Layer (MABL) characteristics, such as limited diurnal evolution, but also show the potential for BL heights to reach up to 1 km, driven by factors like strong winds that increase mechanical turbulence. Additionally, the challenges in estimating the BL height using lidar-derived aerosol mixing height versus profiling of meteorological parameters acquired from radiosondes are illustrated, examining cases with strong and weaker inversions that affect the vertical mixing and the penetration of dust particles within the BL. The findings underline the need for further improvements in the ECMWF/IFS reanalysis model towards capturing the complex interactions between marine and dust-laden air masses over the Atlantic, which are essential for constraining the dynamic processes in BL and aerosol-cloud interactions.