Thesis - Supplementary data 3.2. TPMs for all IWGSC RefSeq v1.1 genes in sub-spike RNA-seq samples
Thesis - Supplementary data 3.2. TPMs for all IWGSC RefSeq v1.1 genes in sub-spike RNA-seq samples
Description:This dataset contains RNA-seq derived transcript per million (TPM) values for all wheat genes expressed in the sub-spike tissue. It also includes differential expression results generated using DESeq2, and multiple functional annotations integrated from external sources to aid interpretation. Content overview: TPM expression matrices Differential expression (DE) results (DESeq2 outputs) Candidate gene lists Functional annotations including: Homoeologue group numbers and TF family assignments from Evans et al., 2022 (doi: 10.1093/g3journal/jkac147) Hormone-related annotations from Max et al., 2022 (Zenodo dataset, doi: 10.5281/zenodo.7082848) Homoeologue group numbers and InterPro annotations from Ensembl Plants Gene Ontology (GO) term: IWGSC RefSeq v2.1 Functional descriptions from FunRiceGenes Comparative analysis to RNA-seq in barley: Walla et al., 2020 (doi: 10.1104/pp.20.00087)
- University of East Anglia United Kingdom
- John Innes Centre United Kingdom
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