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ZENODO
Software . 2025
License: http://www.gnu.org/licenses/agpl.txt
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ZENODO
Software . 2025
License: https://www.gnu.org/licenses/agpl.txt
Data sources: Datacite
ZENODO
Software . 2025
License: https://www.gnu.org/licenses/agpl.txt
Data sources: Datacite
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rhizoSAMSH working model (v 0.3.1)

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 08 Aug 2025Publisher:Zenodo
Authors: Li, Yuze; Medema, Marnix H.;

doi: 10.5281/zenodo.16780330 , 10.5281/zenodo.16780331

rhizoSAMSH working model (v 0.3.1)

Abstract

The working version 0.3.1 was used in our first manuscript about rhizoSMASH. In this version the detection rules have undergone three rounds of manual curation. Visualization has been customized according to the concept of rhizoSMASH. New css was made for better rendering of hybrid regions. Minor bugs caused by genes sitting at the sequence origin in the forked antiSMASH version has been fixed. KnownClusterBlast with a customized rKnownCGC database (including 92 rCGC regions, v1.0.3) was implemented. While the ClusterBlast module was not ready yet.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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