Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2025
Data sources: ZENODO
ZENODO
Dataset . 2025
Data sources: Datacite
ZENODO
Dataset . 2025
Data sources: Datacite
versions View all 2 versions
addClaim

Chemical Templates of the Central molecular Zone

Authors: Vermariën, Gijs; Dutkowska, Katarzyna Magdalena; Viti, Serena;

Chemical Templates of the Central molecular Zone

Abstract

# ACES Chemical TemplatesThis dataset contains over 10K models that condition the chemistry of clouds in the Central Molecular Zone, the analysis of which is done extensively in A&A LINK. Each model was simulated using UCLCHEM, an open-source gas-grain framework. Specifically, version v3.4.0 (https://github.com/uclchem/UCLCHEM/releases/tag/v3.4.0), With one important change: MAX_GRAIN_TEMP=30.0 is changed in surfacereactions.f90. For more information on the simulation framework, please visit uclchem.github.io. # Setup of the dataset.The dataset contains one dataset called `model_df`, which contains the metadata for each of the dataseries within the dataset. The simulation are run in two stages, first stage 1 models are run, which are denoted `collapse`, the final molecular abundances ofthese models is then used for two types of follow up modeling, namely `hotcore` and `cshock`. A more detailed description of these choices can be found in the article. # Loading the datasets with pandas:Each of the datasets can be loaded using the `pandas` and `pytables` packages: `pandas.read_hdf(...)`. Important to note is that some models did not converge, subsequently their dataseries will be missing from the keys, but it will be listed in the `model_df`. A small script to illustrate the basics is available, called `ACES_chemical_templates_inspection.py`. A brief description of bot the model dataframe and the runs can be found below: # Model_dfThe model_df contains all the metadata, the most important parameters are:- *finalDens* The final density in cm^-3- *initialTemp* The initial temperature in K- *zeta* The cosmic ray ionization rate (CRIR) in terms of galactic CRIR (1e-17) in (s^-1)- *radfield* The UV radiation field in (Habing)- *metallicity* The metallicity of the models, 1.0 is the solar metallicity.- *si_depletion_factor* Factor with which we deplete the initial Silicon fraction- *finalTime* The total simulation time in years- *rout* The radius of the cloud in the chemical model- *baseAv* The outer visual extinction at the edge of the cloud- *initialDens* The initial density- *run_id* The name of this model*- *parent_run_id* If it is hotcore or shock, the name of the parent model- *model_type* The type of model: collapse, hotcore or cshock- *model_index* The index of the protostellar heating function for hotcore models- *freezeFactor* Factor that turns on or off the freezing out of species, it is turned out for stage 2 models.- *shock_vel* The shock velocity in km/s- *bm0* The magnetic parameter for shock models # run_XXXXXThe models contain the abundances of each of the species at timesteps, the first columns are:- *Time* Simulation time in years, resets for each stage- *Density* The density- *gasTemp* The temperature of the gas- *dustTemp* The temperature of the dust, note it is coupled to the gas temperature- *Av* The visual extinction- *radfield* The strength of the UV radiation field- *zeta* The CRIR- *dstep* The particle index, each series on has one particle, so its constant- *H* The atomic hydrogen fractional abundance (w.r.t hydrogen nuclei)- ... all >400 molecules

Related Organizations
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Related to Research communities