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Rapid establishment of species barriers in plants compared to animals

Authors: Monnet François; Postel Zoé; Touzet Pascal; Fraïsse Christelle; Van de Peer Yves; Vekemans Xavier; Roux Camille;

Rapid establishment of species barriers in plants compared to animals

Abstract

{"references": ["Y. Liu, et al., New Phytologist 215, 877 (2017).", "H. Dittberner, A. Tellier, J. de Meaux, Molecular Biology and Evolution 39, msac015 (2022).", "M. K. Brandrud, et al., Systematic Biology 69, 91 (2020).", "D. Souto-Vilaros, et al., Journal of Ecology 106, 2256 (2018).", "C. E. Grover, et al., Genome Biology and Evolution 14, evac170 (2022).", "G. L. Owens, et al., Molecular Ecology 30, 6229 (2021).", "Norrell (2017).", "D. P. Wood, J. K. Olofsson, S. W. McKenzie, L. T. Dunning, Botany Letters 165, 476 (2018).", "L. Dunning, et al., Journal of evolutionary biology 29, 1472 (2016).", "O. G. Osborne, et al., Molecular Biology and Evolution 36, 2682 (2019).", "M. Scharmann, A. Wistuba, A. Widmer, Molecular Phylogenetics and Evolution 163, 107214 (2021).", "B. E. Goulet-Scott, A. G. Garner, R. Hopkins, Evolution 75, 1699 (2021).", "X. Ding, J. H. Xiao, L. Li, J. G. Conran, J. Li, Journal of Systematics and Evolution 57, 234 (2019).", "M. M. Tavares, M. Ferro, B. S. S. Leal, C. Palma-Silva, Ecology and Evolution 12, e8834 (2022).", "Y. Sun, et al., Evolution 72, 2669 (2018).", "D. Ru, et al., Molecular Ecology 27, 4875 (2018).", "H. Shang, et al., Philosophical Transactions of the Royal Society B 375, 20190544 (2020).", "S. Grunig, M. Fischer, C. Parisod, Annals of botany 127, 21 (2021).", "J. Ortego, L. L. Knowles, Molecular Ecology 29, 4510 (2020).", "F. Wagner, et al., Molecular phylogenetics and evolution 144, 106702 (2020).", "S. Gramlich, N. D. Wagner, E. H \u0308orandl, BMC Plant Biology 18, 1 (2018).", "B. Nevado, S. A. Harris, M. A. Beaumont, S. J. Hiscock, Molecular Ecology 29, 4221 (2020).", "X.-S. Hu, D. A. Filatov, Molecular ecology 25, 2609 (2016).", "A. Muyle, et al., Molecular Biology and Evolution 38, 805 (2021).", "Y. Feng, H. P. Comes, Y.-X. Qiu, Molecular phylogenetics and evolution 150, 106878 (2020).", "A. M. Royer, M. A. Streisfeld, C. I. Smith, American journal of botany 103, 1730 (2016)."]}

Plant datasets used for demographic inference in the "plants versus animals" comparison. Each archive corresponds to a genus, with the exception of Howea and Linospadix, which are treated as a single dataset. These archives contain at least one "genus_populations.fasta" file corresponding to the individual genotypes used for inferences. Where required, there is also a "genus_reference.fasta" file corresponding to the reference used for read mapping. All references used are coding sequences (CDS).

update since v1.0: addition of auxliaires tables containing 1. the list of plant data used 2. the origin of the reference coding regions (for mapping from sequencing technologies other than RAD-seq) 3. the results of the demographic inferences

Keywords

demographic analysis, speciation, plant, gene flow

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