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ZENODO
Dataset . 2025
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC 0
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC 0
Data sources: Datacite
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SeMRA Raw Semantic Mapping Database

Authors: Hoyt, Charles Tapley; Gyori, Benjamin;

SeMRA Raw Semantic Mapping Database

Abstract

An automatically assembled dataset of raw semantic mappings produced by python -m semra.database. This incorporates mappings from the following places: Ontologies indexed in the Bioregistry (primary) Databases integrated in PyOBO (primary) Biomappings (secondary) Wikidata (primary/secondary) Custom resources integrated in SeMRA (primary) This is a database of raw mapping without further processing. For processed mapping datasets, we suggest smaller domain-specific processing rules (see https://github.com/biopragmatics/semra/tree/main/notebooks/landscape for examples). How to Run Download all artifacts from this Record Make sure that you have Docker running locally Run sh run_on_docker.sh from the command line Navigate to http://localhost:8773 to see the SeMRA dashboard or to http://localhost:7474 for direct access to the Neo4j graph database Licensing Mappings are licensed according to their primary resources. These are explicitly annotated in the SSSOM file on each row (when available) and on the mapping set level in the Neo4j graph database artifacts. Inferred mappings are distributed under the public domain CC0-1.0 license.

Related Organizations
Keywords

OBO Foundry, Semantic Mappings, SSSOM, SeMRA

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average